ND-SAFIR is a software for denoising n-dimentionnal images especially dedicated to microscopy image sequence analysis.
Track vesicle and POI in image sequences (2012) C/C++Įstimate 2D parametric motion model (2012) C/C++ĭetecting moving objects in image sequences by background subtraction (2008/2011) C/C++ Particle and intensity flux estimation (2015) C/C++ģD high-precision gene localization algorithm in cell nuclei (2014-2015) Java (ImageJ)ģD Robust detection of fluorescence accumulation over time in video-microscopy (2007-2008) C/C++ģD Convex Hull for background subtraction (2008-2009) C/C++, Java Segmentation of tomograms in cryo-electron microscopy (2010)ģD flow field estimation and assessment for live cell fluorescence microscopy (2019) Vesicle segmentation and background estimation (2014) C/C++, Java Warp sequence with parametric motion model (1995-2013) C/C++ A multiscale representation of the image is built to automatically select the optimal LoG variance. ATLAS relies on the Laplacian of Gaussian (LoG) filter, which both reduces noise and enhances spots. The spots size is automatically selected and the detection threshold adapts to the local image dynamics. High resolution images can be reconstructed by using detector linear combinations or deconvolution.ĪTLAS is a spot detection method. The 4 variants are RFS-Motion2D, RFS-DeepDOM, WS-Motion2D and WS-DeepDOM.ĪiryscanJ is a high resolution image reconstruction from array detector. In a second step, saliency detection is realised with a convolutional neural network. In a first step, the dominant motion (that is supposed to correspond to camera motion) is compensated. This software detects whether motion saliency is present for each frame of a video. The idea is that if the flow reconstructed in candidate regions from the surrounding flow is very different from the flow present originally, the region should be salient with respect to motion Saliency is then estimated with an optical flow inpainting step. Candidate salient regions are first extracted from motion boundaries.
This software estimates motion saliency maps from video frames. It aims at providing good IT practices, recipies and tools for imaging facilities to deploy interoperable image processing and data analysis solutions.īioImageIT is also a set of tools to facilitate the installation of image management and analysis facility BioImageIT is a France-BioImaging project.
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